Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Smc1aQ9CU62 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC15.74■□□□□ 0.11
Smc1aQ9CU62 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Mir7684-201ENSMUST00000183858 60 ntBASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Gm38294-201ENSMUST00000192831 381 ntBASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Gm18049-201ENSMUST00000208909 581 ntBASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Gm6888-201ENSMUST00000221983 706 ntBASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Smc1aQ9CU62 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gm43195-201ENSMUST00000200614 2332 ntBASIC15.73■□□□□ 0.11
Smc1aQ9CU62 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gm25144-201ENSMUST00000179561 110 ntBASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gm25352-201ENSMUST00000179815 110 ntBASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gm13233-201ENSMUST00000118760 1443 ntBASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gm13244-201ENSMUST00000118855 1446 ntBASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gm8096-201ENSMUST00000209921 1591 ntBASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gm42769-201ENSMUST00000198576 1659 ntBASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Acot6-202ENSMUST00000222921 3622 ntBASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Smc1aQ9CU62 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Gm11424-201ENSMUST00000121929 829 ntBASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Gm8116-201ENSMUST00000182917 1201 ntBASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Rbfox2-208ENSMUST00000227930 1218 ntBASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Gm44981-201ENSMUST00000205549 1943 ntBASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Gm38577-201ENSMUST00000221531 4545 ntBASIC15.72■□□□□ 0.11
Smc1aQ9CU62 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
Smc1aQ9CU62 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms