Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Sorbs3-204ENSMUST00000227929 2460 ntBASIC19.73■□□□□ 0.75
Usp47Q8BY87 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC19.73■□□□□ 0.75
Usp47Q8BY87 AC156560.2-201ENSMUST00000221232 264 ntBASIC19.73■□□□□ 0.75
Usp47Q8BY87 AC155252.1-201ENSMUST00000226462 1208 ntBASIC19.73■□□□□ 0.75
Usp47Q8BY87 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC19.73■□□□□ 0.75
Usp47Q8BY87 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Usp47Q8BY87 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Usp47Q8BY87 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Gm12485-201ENSMUST00000119641 291 ntBASIC19.72■□□□□ 0.75
Usp47Q8BY87 Ptgr2-205ENSMUST00000135001 1286 ntTSL 5 BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Gm27701-201ENSMUST00000184498 110 ntBASIC19.72■□□□□ 0.75
Usp47Q8BY87 Gm18307-201ENSMUST00000206864 949 ntBASIC19.72■□□□□ 0.75
Usp47Q8BY87 Gm18934-201ENSMUST00000216671 1044 ntBASIC19.72■□□□□ 0.75
Usp47Q8BY87 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Swi5-201ENSMUST00000050410 775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Usp47Q8BY87 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp47Q8BY87 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Gm2495-201ENSMUST00000191160 466 ntBASIC19.71■□□□□ 0.75
Usp47Q8BY87 Ighv5-13-201ENSMUST00000193550 290 ntBASIC19.71■□□□□ 0.75
Usp47Q8BY87 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp47Q8BY87 CT030657.3-201ENSMUST00000222707 1200 ntBASIC19.71■□□□□ 0.75
Usp47Q8BY87 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp47Q8BY87 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Usp47Q8BY87 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Usp47Q8BY87 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC19.7■□□□□ 0.74
Usp47Q8BY87 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 AC130829.1-201ENSMUST00000221548 494 ntBASIC19.7■□□□□ 0.74
Usp47Q8BY87 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Usp47Q8BY87 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Usp47Q8BY87 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms