Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc40Q8BI79 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 AC124549.3-201ENSMUST00000225541 367 ntBASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 AC155252.2-201ENSMUST00000226946 680 ntBASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 AC123645.1-201ENSMUST00000228469 605 ntBASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Gm10305-201ENSMUST00000195331 2475 ntBASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Ccdc40Q8BI79 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Gm6756-201ENSMUST00000180647 1620 ntBASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Cand1-201ENSMUST00000020315 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Gm38225-201ENSMUST00000194001 393 ntBASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Smim8-201ENSMUST00000029972 786 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Nudt18-203ENSMUST00000228768 1578 ntBASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Ccdc40Q8BI79 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ccdc40Q8BI79 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ccdc40Q8BI79 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ccdc40Q8BI79 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Ccdc40Q8BI79 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ccdc40Q8BI79 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ccdc40Q8BI79 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ccdc40Q8BI79 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ccdc40Q8BI79 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms