Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Hmgb4Q6P8W9 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Gm45751-201ENSMUST00000210185 1573 ntBASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Hmgb4Q6P8W9 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Gm14042-201ENSMUST00000120139 833 ntBASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Tead1-201ENSMUST00000059768 9964 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Hmgb4Q6P8W9 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Gm12091-201ENSMUST00000146791 830 ntBASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Gm6916-202ENSMUST00000205523 195 ntBASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC14.71□□□□□ -0.05
Hmgb4Q6P8W9 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 78.6 ms