Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.27□□□□□ -0.12
Sh3rf1Q69ZI1 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sh3rf1Q69ZI1 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sh3rf1Q69ZI1 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.12
Sh3rf1Q69ZI1 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Sh3rf1Q69ZI1 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Sh3rf1Q69ZI1 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm22065-201ENSMUST00000103753 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm22066-201ENSMUST00000103761 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm24932-201ENSMUST00000103763 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm24115-201ENSMUST00000103799 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm22190-201ENSMUST00000103827 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm22191-201ENSMUST00000103831 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm24721-201ENSMUST00000103849 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm28018-201ENSMUST00000103869 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm26399-201ENSMUST00000103937 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm25349-201ENSMUST00000177728 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm23616-201ENSMUST00000177797 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm25871-201ENSMUST00000177816 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm24752-201ENSMUST00000178240 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm24496-201ENSMUST00000178287 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm25649-201ENSMUST00000178476 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm25548-201ENSMUST00000178681 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm23147-201ENSMUST00000178841 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm26095-201ENSMUST00000179270 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm22171-201ENSMUST00000179283 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm23936-201ENSMUST00000179354 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm22619-201ENSMUST00000179516 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm25255-201ENSMUST00000179579 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm24755-201ENSMUST00000179691 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm26506-201ENSMUST00000179692 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm25086-201ENSMUST00000179931 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm23243-201ENSMUST00000180047 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm24659-201ENSMUST00000180212 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm24169-201ENSMUST00000180244 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm23689-201ENSMUST00000180354 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm27359-201ENSMUST00000184153 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm27785-201ENSMUST00000184268 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm27466-201ENSMUST00000184396 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm27430-201ENSMUST00000184585 107 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm27703-201ENSMUST00000184836 110 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm44333-201ENSMUST00000197168 107 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 CT030684.1-201ENSMUST00000227292 914 ntBASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
Sh3rf1Q69ZI1 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Trim45-203ENSMUST00000106980 3337 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Sh3rf1Q69ZI1 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms