Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC15.41■□□□□ 0.06
Col11a1Q61245 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Col11a1Q61245 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC15.41■□□□□ 0.06
Col11a1Q61245 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Col11a1Q61245 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
Col11a1Q61245 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Gm37411-201ENSMUST00000194180 2282 ntBASIC15.41■□□□□ 0.06
Col11a1Q61245 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC15.41■□□□□ 0.06
Col11a1Q61245 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Col11a1Q61245 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC15.4■□□□□ 0.06
Col11a1Q61245 B9d1os-201ENSMUST00000137010 674 ntBASIC15.4■□□□□ 0.06
Col11a1Q61245 Gm22334-201ENSMUST00000158070 133 ntBASIC15.4■□□□□ 0.06
Col11a1Q61245 Mir6927-201ENSMUST00000184494 71 ntBASIC15.4■□□□□ 0.06
Col11a1Q61245 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Col11a1Q61245 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
Col11a1Q61245 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Col11a1Q61245 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Col11a1Q61245 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC15.4■□□□□ 0.06
Col11a1Q61245 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC15.4■□□□□ 0.06
Col11a1Q61245 Morn2-202ENSMUST00000227729 656 ntBASIC15.4■□□□□ 0.06
Col11a1Q61245 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC15.4■□□□□ 0.06
Col11a1Q61245 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Col11a1Q61245 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
Col11a1Q61245 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Col11a1Q61245 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
Col11a1Q61245 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC15.39■□□□□ 0.05
Col11a1Q61245 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC15.39■□□□□ 0.05
Col11a1Q61245 Gm2260-201ENSMUST00000184965 657 ntBASIC15.39■□□□□ 0.05
Col11a1Q61245 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Col11a1Q61245 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Gm9333-201ENSMUST00000205452 1323 ntBASIC15.39■□□□□ 0.05
Col11a1Q61245 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Col11a1Q61245 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Col11a1Q61245 Gm38049-201ENSMUST00000195698 1372 ntBASIC15.39■□□□□ 0.05
Col11a1Q61245 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC15.38■□□□□ 0.05
Col11a1Q61245 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col11a1Q61245 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col11a1Q61245 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col11a1Q61245 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col11a1Q61245 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC15.38■□□□□ 0.05
Col11a1Q61245 Gm26185-201ENSMUST00000157692 266 ntBASIC15.38■□□□□ 0.05
Col11a1Q61245 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Col11a1Q61245 Gm28693-202ENSMUST00000190758 331 ntBASIC15.38■□□□□ 0.05
Col11a1Q61245 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col11a1Q61245 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC15.38■□□□□ 0.05
Col11a1Q61245 Abhd11os-203ENSMUST00000222613 363 ntBASIC15.38■□□□□ 0.05
Col11a1Q61245 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Col11a1Q61245 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Col11a1Q61245 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC15.38■□□□□ 0.05
Col11a1Q61245 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Col11a1Q61245 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Col11a1Q61245 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Col11a1Q61245 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 66.9 ms