Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Gm4609-201ENSMUST00000106443 1002 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gm5138-201ENSMUST00000113842 1002 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Gm15191-201ENSMUST00000117933 1000 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gm12182-201ENSMUST00000118655 1008 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gm13882-201ENSMUST00000120886 1002 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Cdx1P18111 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC11.38□□□□□ -0.59
Cdx1P18111 Gm10284-201ENSMUST00000145057 1005 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gm10481-201ENSMUST00000179228 1002 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gm2574-201ENSMUST00000181051 1002 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gm3200-201ENSMUST00000181493 1002 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gm8825-201ENSMUST00000182565 998 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gm4518-201ENSMUST00000182638 718 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gm8330-201ENSMUST00000182754 1008 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gm4575-201ENSMUST00000182991 1002 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gm8709-201ENSMUST00000183230 1012 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC11.38□□□□□ -0.59
Cdx1P18111 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
Cdx1P18111 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Cdx1P18111 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Gm10293-201ENSMUST00000076317 1002 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Gm6316-201ENSMUST00000082064 1020 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
Cdx1P18111 2310007B03Rik-202ENSMUST00000143419 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Cdx1P18111 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC11.38□□□□□ -0.59
Cdx1P18111 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Cdx1P18111 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Cdx1P18111 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cdx1P18111 Gm4780-202ENSMUST00000215200 2644 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC11.38□□□□□ -0.59
Cdx1P18111 Gm7049-201ENSMUST00000223520 1712 ntBASIC11.38□□□□□ -0.59
Cdx1P18111 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC11.37□□□□□ -0.59
Cdx1P18111 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Cdx1P18111 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Gm23935-201ENSMUST00000102303 57 ntBASIC11.37□□□□□ -0.59
Cdx1P18111 Gm24270-201ENSMUST00000102326 57 ntBASIC11.37□□□□□ -0.59
Cdx1P18111 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC11.37□□□□□ -0.59
Cdx1P18111 Gm24245-201ENSMUST00000157318 57 ntBASIC11.37□□□□□ -0.59
Cdx1P18111 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC11.37□□□□□ -0.59
Cdx1P18111 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
Cdx1P18111 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC11.37□□□□□ -0.59
Cdx1P18111 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 AC159106.1-201ENSMUST00000224421 690 ntBASIC11.37□□□□□ -0.59
Cdx1P18111 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC11.37□□□□□ -0.59
Cdx1P18111 Ppcdc-209ENSMUST00000214624 1814 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC11.37□□□□□ -0.59
Cdx1P18111 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
Cdx1P18111 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Cdx1P18111 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms