Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC13.36□□□□□ -0.27
Lire1P11260 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Lire1P11260 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Lire1P11260 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Gm29361-201ENSMUST00000183323 2000 ntBASIC13.36□□□□□ -0.27
Lire1P11260 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Lire1P11260 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC13.36□□□□□ -0.27
Lire1P11260 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC13.36□□□□□ -0.27
Lire1P11260 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC13.36□□□□□ -0.27
Lire1P11260 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC13.36□□□□□ -0.27
Lire1P11260 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC13.36□□□□□ -0.27
Lire1P11260 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC13.36□□□□□ -0.27
Lire1P11260 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Lire1P11260 Gm27321-201ENSMUST00000185021 205 ntBASIC13.36□□□□□ -0.27
Lire1P11260 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Gm18246-201ENSMUST00000221023 728 ntBASIC13.36□□□□□ -0.27
Lire1P11260 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Lire1P11260 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC13.36□□□□□ -0.27
Lire1P11260 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Lire1P11260 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
Lire1P11260 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Gm13410-201ENSMUST00000117058 1415 ntBASIC13.36□□□□□ -0.27
Lire1P11260 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Lire1P11260 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
Lire1P11260 AC107453.4-201ENSMUST00000227068 1817 ntBASIC13.36□□□□□ -0.27
Lire1P11260 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Lire1P11260 Dgcr8-202ENSMUST00000115633 4522 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Lire1P11260 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC13.36□□□□□ -0.27
Lire1P11260 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC13.36□□□□□ -0.27
Lire1P11260 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Lire1P11260 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
Lire1P11260 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Lire1P11260 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Lire1P11260 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC13.35□□□□□ -0.27
Lire1P11260 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Lire1P11260 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Lire1P11260 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Lire1P11260 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Lire1P11260 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC13.35□□□□□ -0.27
Lire1P11260 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Lire1P11260 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lire1P11260 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.34□□□□□ -0.27
Lire1P11260 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.34□□□□□ -0.27
Lire1P11260 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Lire1P11260 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Lire1P11260 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Lire1P11260 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms