Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC16.58■□□□□ 0.24
Col3a1P08121 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
Col3a1P08121 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col3a1P08121 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC16.58■□□□□ 0.24
Col3a1P08121 Gm38230-201ENSMUST00000193572 1159 ntBASIC16.58■□□□□ 0.24
Col3a1P08121 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC16.58■□□□□ 0.24
Col3a1P08121 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col3a1P08121 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col3a1P08121 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col3a1P08121 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col3a1P08121 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC16.58■□□□□ 0.24
Col3a1P08121 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col3a1P08121 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col3a1P08121 Sorbs3-204ENSMUST00000227929 2460 ntBASIC16.57■□□□□ 0.24
Col3a1P08121 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Col3a1P08121 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Col3a1P08121 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col3a1P08121 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col3a1P08121 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
Col3a1P08121 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC16.57■□□□□ 0.24
Col3a1P08121 Gm12957-201ENSMUST00000117835 377 ntBASIC16.57■□□□□ 0.24
Col3a1P08121 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC16.57■□□□□ 0.24
Col3a1P08121 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col3a1P08121 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC16.57■□□□□ 0.24
Col3a1P08121 AC122459.1-201ENSMUST00000228373 885 ntBASIC16.57■□□□□ 0.24
Col3a1P08121 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col3a1P08121 Gm20632-201ENSMUST00000176760 2427 ntBASIC16.57■□□□□ 0.24
Col3a1P08121 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col3a1P08121 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col3a1P08121 Gm26513-201ENSMUST00000181802 2489 ntBASIC16.57■□□□□ 0.24
Col3a1P08121 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col3a1P08121 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col3a1P08121 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col3a1P08121 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC16.57■□□□□ 0.24
Col3a1P08121 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col3a1P08121 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Col3a1P08121 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
Col3a1P08121 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC16.57■□□□□ 0.24
Col3a1P08121 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Col3a1P08121 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Col3a1P08121 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Col3a1P08121 Zscan30-202ENSMUST00000224144 1458 ntBASIC16.57■□□□□ 0.24
Col3a1P08121 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Col3a1P08121 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Col3a1P08121 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Gm27847-201ENSMUST00000183711 107 ntBASIC16.56■□□□□ 0.24
Col3a1P08121 Gm27375-201ENSMUST00000183799 107 ntBASIC16.56■□□□□ 0.24
Col3a1P08121 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC16.56■□□□□ 0.24
Col3a1P08121 Myl10-204ENSMUST00000197186 607 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Gm38671-201ENSMUST00000200573 130 ntBASIC16.56■□□□□ 0.24
Col3a1P08121 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC16.56■□□□□ 0.24
Col3a1P08121 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
Col3a1P08121 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Col3a1P08121 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Gm9755-201ENSMUST00000032981 1356 ntBASIC16.56■□□□□ 0.24
Col3a1P08121 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Col3a1P08121 Abhd6-202ENSMUST00000166497 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Col3a1P08121 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Ttll3-206ENSMUST00000204026 1472 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Col3a1P08121 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col3a1P08121 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col3a1P08121 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
Col3a1P08121 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Col3a1P08121 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC16.55■□□□□ 0.24
Col3a1P08121 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Col3a1P08121 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Col3a1P08121 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col3a1P08121 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Col3a1P08121 Gm42929-201ENSMUST00000198374 1286 ntBASIC16.55■□□□□ 0.24
Col3a1P08121 Gm42550-201ENSMUST00000201553 960 ntBASIC16.55■□□□□ 0.24
Col3a1P08121 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC16.55■□□□□ 0.24
Col3a1P08121 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col3a1P08121 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Col3a1P08121 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col3a1P08121 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col3a1P08121 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col3a1P08121 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col3a1P08121 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col3a1P08121 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col3a1P08121 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Col3a1P08121 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC16.55■□□□□ 0.24
Col3a1P08121 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col3a1P08121 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Col3a1P08121 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Col3a1P08121 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms