Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm3961-201ENSMUST00000204425 994 ntBASIC16.41■□□□□ 0.22
Scn11aQ9R053 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC16.41■□□□□ 0.22
Scn11aQ9R053 AC155637.1-201ENSMUST00000218560 636 ntBASIC16.41■□□□□ 0.22
Scn11aQ9R053 CU024892.2-201ENSMUST00000224608 832 ntBASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm17383-201ENSMUST00000078739 1041 ntBASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm7553-201ENSMUST00000185805 1426 ntBASIC16.41■□□□□ 0.22
Scn11aQ9R053 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm5687-201ENSMUST00000118252 640 ntBASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm5370-201ENSMUST00000187187 574 ntBASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Gm7993-201ENSMUST00000200970 1384 ntBASIC16.41■□□□□ 0.22
Scn11aQ9R053 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Scn11aQ9R053 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC16.4■□□□□ 0.22
Scn11aQ9R053 I730028E13Rik-201ENSMUST00000216012 1959 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Gm5187-201ENSMUST00000117317 991 ntBASIC16.4■□□□□ 0.22
Scn11aQ9R053 Glo1-202ENSMUST00000167624 895 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC16.4■□□□□ 0.22
Scn11aQ9R053 AC132317.1-201ENSMUST00000227227 962 ntBASIC16.4■□□□□ 0.22
Scn11aQ9R053 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Scn11aQ9R053 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.22
Scn11aQ9R053 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Scn11aQ9R053 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
Scn11aQ9R053 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Gm9755-201ENSMUST00000032981 1356 ntBASIC16.39■□□□□ 0.21
Scn11aQ9R053 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Gm43822-201ENSMUST00000200285 476 ntBASIC16.39■□□□□ 0.21
Scn11aQ9R053 Gm38671-201ENSMUST00000200573 130 ntBASIC16.39■□□□□ 0.21
Scn11aQ9R053 Gm44064-201ENSMUST00000204964 1087 ntBASIC16.39■□□□□ 0.21
Scn11aQ9R053 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC16.39■□□□□ 0.21
Scn11aQ9R053 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn11aQ9R053 Gm22018-201ENSMUST00000104357 131 ntBASIC16.38■□□□□ 0.21
Scn11aQ9R053 Gm15808-201ENSMUST00000119046 604 ntBASIC16.38■□□□□ 0.21
Scn11aQ9R053 Gm13123-201ENSMUST00000122173 492 ntBASIC16.38■□□□□ 0.21
Scn11aQ9R053 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC16.38■□□□□ 0.21
Scn11aQ9R053 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 92.9 ms