Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Lima1Q9ERG0 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lima1Q9ERG0 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Lima1Q9ERG0 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Lima1Q9ERG0 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lima1Q9ERG0 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lima1Q9ERG0 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lima1Q9ERG0 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Lima1Q9ERG0 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Gm15889-202ENSMUST00000212669 2443 ntBASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Gm6159-201ENSMUST00000191249 1724 ntBASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
Lima1Q9ERG0 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Gm9252-201ENSMUST00000172364 1602 ntBASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Psph-201ENSMUST00000031399 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Mir8117-201ENSMUST00000184773 107 ntBASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Lima1Q9ERG0 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lima1Q9ERG0 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lima1Q9ERG0 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lima1Q9ERG0 AC154262.2-201ENSMUST00000224310 2293 ntBASIC13.89□□□□□ -0.19
Lima1Q9ERG0 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lima1Q9ERG0 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC13.89□□□□□ -0.19
Lima1Q9ERG0 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lima1Q9ERG0 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lima1Q9ERG0 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lima1Q9ERG0 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
Lima1Q9ERG0 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lima1Q9ERG0 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lima1Q9ERG0 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms