Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ddx56Q9D0R4 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Gm25948-201ENSMUST00000175334 112 ntBASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ddx56Q9D0R4 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Gm12428-201ENSMUST00000119844 727 ntBASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Gm27622-201ENSMUST00000183779 60 ntBASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Gm45667-201ENSMUST00000210380 1316 ntBASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ddx56Q9D0R4 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Gm12020-201ENSMUST00000119030 2042 ntBASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Gm27430-201ENSMUST00000184585 107 ntBASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Ighv1-25-201ENSMUST00000195638 345 ntBASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Gm44333-201ENSMUST00000197168 107 ntBASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 AC121804.3-201ENSMUST00000223420 295 ntBASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Fgf17-202ENSMUST00000227123 1336 ntBASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC14.79□□□□□ -0.04
Ddx56Q9D0R4 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ddx56Q9D0R4 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC14.78□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 57.4 ms