Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Clp1Q99LI9 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
Clp1Q99LI9 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Clp1Q99LI9 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Clp1Q99LI9 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
Clp1Q99LI9 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Clp1Q99LI9 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC14.77□□□□□ -0.05
Clp1Q99LI9 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC14.77□□□□□ -0.05
Clp1Q99LI9 Gm2639-201ENSMUST00000156881 1297 ntBASIC14.77□□□□□ -0.05
Clp1Q99LI9 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Clp1Q99LI9 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Clp1Q99LI9 CU024892.2-201ENSMUST00000224608 832 ntBASIC14.77□□□□□ -0.05
Clp1Q99LI9 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC14.77□□□□□ -0.05
Clp1Q99LI9 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Clp1Q99LI9 Gm5161-201ENSMUST00000075243 853 ntBASIC14.77□□□□□ -0.05
Clp1Q99LI9 Gm24447-201ENSMUST00000083977 338 ntBASIC14.77□□□□□ -0.05
Clp1Q99LI9 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Clp1Q99LI9 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Clp1Q99LI9 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Clp1Q99LI9 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
Clp1Q99LI9 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC14.76□□□□□ -0.05
Clp1Q99LI9 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Gm4081-201ENSMUST00000195287 1838 ntBASIC14.76□□□□□ -0.05
Clp1Q99LI9 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Gm8213-201ENSMUST00000118191 441 ntBASIC14.76□□□□□ -0.05
Clp1Q99LI9 Gm10156-201ENSMUST00000122364 462 ntBASIC14.76□□□□□ -0.05
Clp1Q99LI9 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Proscos-202ENSMUST00000178990 666 ntBASIC14.76□□□□□ -0.05
Clp1Q99LI9 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Gm44711-201ENSMUST00000205414 1264 ntBASIC14.76□□□□□ -0.05
Clp1Q99LI9 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Clp1Q99LI9 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Gm6152-201ENSMUST00000151704 340 ntBASIC14.75□□□□□ -0.05
Clp1Q99LI9 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Gm8810-201ENSMUST00000172895 754 ntBASIC14.75□□□□□ -0.05
Clp1Q99LI9 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Gm27331-201ENSMUST00000183705 60 ntBASIC14.75□□□□□ -0.05
Clp1Q99LI9 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC14.75□□□□□ -0.05
Clp1Q99LI9 Gm19309-201ENSMUST00000218295 205 ntBASIC14.75□□□□□ -0.05
Clp1Q99LI9 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Clp1Q99LI9 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Clp1Q99LI9 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Clp1Q99LI9 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Clp1Q99LI9 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Clp1Q99LI9 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Clp1Q99LI9 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Clp1Q99LI9 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC14.74□□□□□ -0.05
Clp1Q99LI9 Gm13034-201ENSMUST00000121342 3177 ntBASIC14.74□□□□□ -0.05
Clp1Q99LI9 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Clp1Q99LI9 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms