Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Cisd3-201ENSMUST00000107583 737 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Gm43371-201ENSMUST00000202838 1031 ntBASIC15.59■□□□□ 0.09
Trim47Q8C0E3 AC135669.1-201ENSMUST00000213585 412 ntBASIC15.59■□□□□ 0.09
Trim47Q8C0E3 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 AC166574.6-201ENSMUST00000227889 1806 ntBASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Gm42471-201ENSMUST00000201457 1865 ntBASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Ldb3-207ENSMUST00000227819 1499 ntBASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Trim47Q8C0E3 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
Trim47Q8C0E3 Gm14452-201ENSMUST00000118680 1632 ntBASIC15.58■□□□□ 0.09
Trim47Q8C0E3 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Trim47Q8C0E3 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Gm12859-201ENSMUST00000117834 427 ntBASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Trim47Q8C0E3 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Gm4804-201ENSMUST00000182234 999 ntBASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 AC114543.1-201ENSMUST00000226451 1558 ntBASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Trim47Q8C0E3 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms