Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
Cd40lgP27548 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
Cd40lgP27548 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Cd40lgP27548 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Cd40lgP27548 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC13.01□□□□□ -0.33
Cd40lgP27548 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC13.01□□□□□ -0.33
Cd40lgP27548 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Cd40lgP27548 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Cd40lgP27548 AA543401-201ENSMUST00000164248 1269 ntBASIC13.01□□□□□ -0.33
Cd40lgP27548 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Cd40lgP27548 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
Cd40lgP27548 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC13.01□□□□□ -0.33
Cd40lgP27548 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Cd40lgP27548 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 AC159621.2-201ENSMUST00000223519 1326 ntBASIC13□□□□□ -0.33
Cd40lgP27548 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Cd40lgP27548 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC13□□□□□ -0.33
Cd40lgP27548 AC159114.1-201ENSMUST00000220349 266 ntBASIC13□□□□□ -0.33
Cd40lgP27548 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Cd40lgP27548 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC13□□□□□ -0.33
Cd40lgP27548 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Cd40lgP27548 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Cd40lgP27548 Gm5357-201ENSMUST00000212720 1924 ntBASIC13□□□□□ -0.33
Cd40lgP27548 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Cd40lgP27548 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Cd40lgP27548 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Cd40lgP27548 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 AC154767.3-201ENSMUST00000225150 1342 ntBASIC12.99□□□□□ -0.33
Cd40lgP27548 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cd40lgP27548 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC12.99□□□□□ -0.33
Cd40lgP27548 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms