Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 AC126549.2-201ENSMUST00000223997 1976 ntBASIC13.8□□□□□ -0.2
Cbx4O55187 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
Cbx4O55187 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Cbx4O55187 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Cbx4O55187 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Cbx4O55187 Gm7774-201ENSMUST00000200064 533 ntBASIC13.8□□□□□ -0.2
Cbx4O55187 Gm5779-201ENSMUST00000218467 910 ntBASIC13.8□□□□□ -0.2
Cbx4O55187 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Cbx4O55187 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Cbx4O55187 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Cbx4O55187 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Cbx4O55187 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Gm43056-201ENSMUST00000197865 2791 ntBASIC13.8□□□□□ -0.2
Cbx4O55187 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cbx4O55187 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
Cbx4O55187 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Cbx4O55187 Mir449b-201ENSMUST00000104833 80 ntBASIC13.79□□□□□ -0.2
Cbx4O55187 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 AA543401-201ENSMUST00000164248 1269 ntBASIC13.79□□□□□ -0.2
Cbx4O55187 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC13.79□□□□□ -0.2
Cbx4O55187 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Cbx4O55187 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Cbx4O55187 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Cbx4O55187 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
Cbx4O55187 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cbx4O55187 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Cbx4O55187 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
Cbx4O55187 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Cbx4O55187 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC13.78□□□□□ -0.2
Cbx4O55187 Ighv8-14-201ENSMUST00000196781 358 ntBASIC13.78□□□□□ -0.2
Cbx4O55187 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC13.78□□□□□ -0.2
Cbx4O55187 AC090659.2-201ENSMUST00000225378 1186 ntBASIC13.78□□□□□ -0.2
Cbx4O55187 AC154621.1-201ENSMUST00000226155 1119 ntBASIC13.78□□□□□ -0.2
Cbx4O55187 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Mir125a-201ENSMUST00000083545 68 ntBASIC13.78□□□□□ -0.2
Cbx4O55187 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Gm13517-201ENSMUST00000120782 1495 ntBASIC13.78□□□□□ -0.2
Cbx4O55187 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Cbx4O55187 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms