Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Gm16215-201ENSMUST00000161990 637 ntBASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Gm10766-202ENSMUST00000194123 606 ntBASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Gm7730-201ENSMUST00000212486 454 ntBASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Gm20445-201ENSMUST00000061905 565 ntBASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Gm38102-201ENSMUST00000192791 1935 ntBASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cpsf3Q9QXK7 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Gm6283-201ENSMUST00000182369 1000 ntBASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cpsf3Q9QXK7 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Gm21854-201ENSMUST00000179901 471 ntBASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 AC131690.1-201ENSMUST00000218406 374 ntBASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 AC124732.1-201ENSMUST00000221551 910 ntBASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 AC154846.1-201ENSMUST00000226278 862 ntBASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Gm2423-201ENSMUST00000074863 733 ntBASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Hist1h2al-201ENSMUST00000091708 339 ntBASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Gnas-210ENSMUST00000109095 2059 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Gm9347-201ENSMUST00000211473 1607 ntBASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Gm3365-201ENSMUST00000216296 1480 ntBASIC15.13■□□□□ 0.01
Cpsf3Q9QXK7 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Gm22189-201ENSMUST00000103822 86 ntBASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Gm8584-201ENSMUST00000171982 758 ntBASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Cpsf3Q9QXK7 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms