Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cdc40Q9DC48 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Gm25144-201ENSMUST00000179561 110 ntBASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Gm25352-201ENSMUST00000179815 110 ntBASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Gm27437-201ENSMUST00000183429 107 ntBASIC13.12□□□□□ -0.31
Cdc40Q9DC48 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 AC124751.1-201ENSMUST00000222716 1408 ntBASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Gm42466-201ENSMUST00000202099 1301 ntBASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC13.12□□□□□ -0.31
Cdc40Q9DC48 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Gm5186-201ENSMUST00000218781 920 ntBASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Cdc40Q9DC48 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdc40Q9DC48 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdc40Q9DC48 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Cdc40Q9DC48 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms