Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Smc1aQ9CU62 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Smc1aQ9CU62 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Gm45293-201ENSMUST00000209754 1812 ntBASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Gm43364-201ENSMUST00000196046 3274 ntBASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Gm8410-201ENSMUST00000117225 605 ntBASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Smc1aQ9CU62 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Mir8102-201ENSMUST00000184148 139 ntBASIC15.79■□□□□ 0.12
Smc1aQ9CU62 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Smc1aQ9CU62 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Gm27306-201ENSMUST00000183970 107 ntBASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Smc1aQ9CU62 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 61.7 ms