Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Gm5639-201ENSMUST00000122305 2403 ntBASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Mir3113-201ENSMUST00000175478 76 ntBASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Gm37019-201ENSMUST00000192133 2134 ntBASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Gpr146-202ENSMUST00000053120 1040 ntBASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Cdk5rap3Q99LM2 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Gm12020-201ENSMUST00000119030 2042 ntBASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Gm2420-202ENSMUST00000202224 2249 ntBASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Gm12260-201ENSMUST00000122447 411 ntBASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Gm11025-201ENSMUST00000140773 466 ntBASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Gm18737-201ENSMUST00000173594 937 ntBASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Gm42934-201ENSMUST00000196920 1345 ntBASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Pxylp1-203ENSMUST00000119141 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Gm11405-201ENSMUST00000118689 1556 ntBASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Cdk5rap3Q99LM2 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Lsm14b-202ENSMUST00000058764 2566 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Gm12017-201ENSMUST00000122453 1003 ntBASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Gm17271-201ENSMUST00000165535 355 ntBASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Cdk5rap3Q99LM2 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC14.59□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms