Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Gm18766-201ENSMUST00000189811 808 ntBASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 AC124732.1-201ENSMUST00000221551 910 ntBASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Gm42471-201ENSMUST00000201457 1865 ntBASIC15.82■□□□□ 0.12
Ushbp1Q8R370 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm9109-201ENSMUST00000120254 1405 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm14719-201ENSMUST00000121891 340 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm8584-201ENSMUST00000171982 758 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm29310-201ENSMUST00000185468 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21825-201ENSMUST00000185728 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm29109-201ENSMUST00000185895 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21896-201ENSMUST00000186520 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21873-201ENSMUST00000186728 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21794-201ENSMUST00000187056 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21880-201ENSMUST00000187275 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21826-201ENSMUST00000187451 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21198-201ENSMUST00000188393 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21749-201ENSMUST00000189343 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21901-201ENSMUST00000189568 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm29424-201ENSMUST00000189716 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm28599-201ENSMUST00000189838 694 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21867-201ENSMUST00000189917 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm29269-201ENSMUST00000190087 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21722-201ENSMUST00000190153 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm28423-201ENSMUST00000190701 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21899-201ENSMUST00000190745 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21910-201ENSMUST00000191163 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21849-201ENSMUST00000191571 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm28678-201ENSMUST00000191593 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm20910-201ENSMUST00000193268 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm21871-201ENSMUST00000194621 696 ntBASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Ushbp1Q8R370 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Syt7-204ENSMUST00000223586 1344 ntBASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Gm14767-201ENSMUST00000121559 586 ntBASIC15.8■□□□□ 0.12
Ushbp1Q8R370 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Ushbp1Q8R370 Gm6473-201ENSMUST00000188572 1210 ntBASIC15.8■□□□□ 0.12
Ushbp1Q8R370 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms