Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Brf1Q8CFK2 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Gm13453-201ENSMUST00000118708 357 ntBASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Brf1Q8CFK2 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Gm5320-201ENSMUST00000207163 1519 ntBASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Gm14767-201ENSMUST00000121559 586 ntBASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Gm27680-201ENSMUST00000184192 160 ntBASIC17.02■□□□□ 0.32
Brf1Q8CFK2 AC156016.3-201ENSMUST00000228623 344 ntBASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Brf1Q8CFK2 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC17.02■□□□□ 0.31
Brf1Q8CFK2 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Brf1Q8CFK2 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Brf1Q8CFK2 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC17.02■□□□□ 0.31
Brf1Q8CFK2 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Brf1Q8CFK2 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Brf1Q8CFK2 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC17.02■□□□□ 0.31
Brf1Q8CFK2 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Brf1Q8CFK2 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Brf1Q8CFK2 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 AC159621.2-201ENSMUST00000223519 1326 ntBASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Gm33320-201ENSMUST00000192232 530 ntBASIC17.01■□□□□ 0.31
Brf1Q8CFK2 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Brf1Q8CFK2 AC166574.6-201ENSMUST00000227889 1806 ntBASIC17■□□□□ 0.31
Brf1Q8CFK2 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
Brf1Q8CFK2 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC17■□□□□ 0.31
Brf1Q8CFK2 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Brf1Q8CFK2 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC17■□□□□ 0.31
Brf1Q8CFK2 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC17■□□□□ 0.31
Brf1Q8CFK2 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC17■□□□□ 0.31
Brf1Q8CFK2 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC17■□□□□ 0.31
Brf1Q8CFK2 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC17■□□□□ 0.31
Brf1Q8CFK2 Gm43703-201ENSMUST00000200523 763 ntBASIC17■□□□□ 0.31
Brf1Q8CFK2 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Brf1Q8CFK2 Gm44872-201ENSMUST00000207864 420 ntBASIC17■□□□□ 0.31
Brf1Q8CFK2 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC17■□□□□ 0.31
Brf1Q8CFK2 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC17■□□□□ 0.31
Brf1Q8CFK2 Gm9229-201ENSMUST00000222777 126 ntBASIC17■□□□□ 0.31
Brf1Q8CFK2 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 49 ms