Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Syt7-205ENSMUST00000224135 1557 ntBASIC16.62■□□□□ 0.25
Trim56Q80VI1 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Gm43056-201ENSMUST00000197865 2791 ntBASIC16.61■□□□□ 0.25
Trim56Q80VI1 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 AC148324.1-201ENSMUST00000219034 4240 ntBASIC16.61■□□□□ 0.25
Trim56Q80VI1 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Trim56Q80VI1 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Gm42612-201ENSMUST00000197986 623 ntBASIC16.61■□□□□ 0.25
Trim56Q80VI1 Gm43170-201ENSMUST00000199827 612 ntBASIC16.61■□□□□ 0.25
Trim56Q80VI1 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Aldh3b1-201ENSMUST00000051803 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim56Q80VI1 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Rgl1-203ENSMUST00000111859 5092 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Gm28182-201ENSMUST00000188354 2477 ntBASIC16.6■□□□□ 0.25
Trim56Q80VI1 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC16.6■□□□□ 0.25
Trim56Q80VI1 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC16.6■□□□□ 0.25
Trim56Q80VI1 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Gm9797-201ENSMUST00000052902 613 ntBASIC16.6■□□□□ 0.25
Trim56Q80VI1 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trim56Q80VI1 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Gm14452-201ENSMUST00000118680 1632 ntBASIC16.59■□□□□ 0.25
Trim56Q80VI1 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Gm42690-201ENSMUST00000197921 1836 ntBASIC16.59■□□□□ 0.25
Trim56Q80VI1 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Gm5866-201ENSMUST00000177881 973 ntBASIC16.59■□□□□ 0.25
Trim56Q80VI1 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC16.59■□□□□ 0.25
Trim56Q80VI1 AC131690.1-201ENSMUST00000218406 374 ntBASIC16.59■□□□□ 0.25
Trim56Q80VI1 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trim56Q80VI1 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms