Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Snrnp40Q6PE01 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Snrnp40Q6PE01 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC12.37□□□□□ -0.43
Snrnp40Q6PE01 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Snrnp40Q6PE01 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Gm44397-201ENSMUST00000195950 113 ntBASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Gm7553-201ENSMUST00000185805 1426 ntBASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Gm42471-201ENSMUST00000201457 1865 ntBASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC12.36□□□□□ -0.43
Snrnp40Q6PE01 AC133083.1-201ENSMUST00000221736 2209 ntBASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Car6-202ENSMUST00000105683 1460 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Gm23931-201ENSMUST00000103842 109 ntBASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Gm38223-201ENSMUST00000194484 695 ntBASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 AC166997.1-201ENSMUST00000225122 572 ntBASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Gm9109-201ENSMUST00000120254 1405 ntBASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Snrnp40Q6PE01 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Gm22331-201ENSMUST00000158066 136 ntBASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Fbxw4-209ENSMUST00000162433 789 ntTSL 3 BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Gm9124-201ENSMUST00000191789 1092 ntBASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Gm9113-201ENSMUST00000192510 1018 ntBASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Gm9131-201ENSMUST00000193557 1089 ntBASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Gm9121-201ENSMUST00000193749 1071 ntBASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Snrnp40Q6PE01 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms