Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Gm13453-201ENSMUST00000118708 357 ntBASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Ighv8-14-201ENSMUST00000196781 358 ntBASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 AC126408.1-201ENSMUST00000225184 523 ntBASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gm13223-201ENSMUST00000118609 747 ntBASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gm14767-201ENSMUST00000121559 586 ntBASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gm44344-201ENSMUST00000200287 129 ntBASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gm6916-202ENSMUST00000205523 195 ntBASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gm46209-201ENSMUST00000217912 553 ntBASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Gm45667-201ENSMUST00000210380 1316 ntBASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 AC121801.1-201ENSMUST00000225363 1899 ntBASIC15.1■□□□□ 0.01
Upf3bQ3ULL6 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Mmp14-206ENSMUST00000225641 3238 ntBASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Ighv1-25-201ENSMUST00000195638 345 ntBASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Yap1-202ENSMUST00000086580 4115 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Upf3bQ3ULL6 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms