Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Col8a1Q00780 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Col8a1Q00780 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Col8a1Q00780 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Col8a1Q00780 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Col8a1Q00780 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Col8a1Q00780 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Col8a1Q00780 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Col8a1Q00780 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col8a1Q00780 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Col8a1Q00780 Gm17795-201ENSMUST00000214505 757 ntBASIC12.02□□□□□ -0.49
Col8a1Q00780 AC110817.1-201ENSMUST00000225706 605 ntBASIC12.02□□□□□ -0.49
Col8a1Q00780 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col8a1Q00780 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col8a1Q00780 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col8a1Q00780 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Col8a1Q00780 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC12.02□□□□□ -0.49
Col8a1Q00780 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Col8a1Q00780 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Col8a1Q00780 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC12.01□□□□□ -0.49
Col8a1Q00780 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC12.01□□□□□ -0.49
Col8a1Q00780 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Col8a1Q00780 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Ighv1-25-201ENSMUST00000195638 345 ntBASIC12.01□□□□□ -0.49
Col8a1Q00780 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC12.01□□□□□ -0.49
Col8a1Q00780 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC12.01□□□□□ -0.49
Col8a1Q00780 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Col8a1Q00780 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Col8a1Q00780 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Col8a1Q00780 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
Col8a1Q00780 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Col8a1Q00780 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Col8a1Q00780 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC12□□□□□ -0.49
Col8a1Q00780 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC12□□□□□ -0.49
Col8a1Q00780 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Gm23931-201ENSMUST00000103842 109 ntBASIC12□□□□□ -0.49
Col8a1Q00780 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC12□□□□□ -0.49
Col8a1Q00780 Gm5187-201ENSMUST00000117317 991 ntBASIC12□□□□□ -0.49
Col8a1Q00780 Gm14723-201ENSMUST00000118686 215 ntBASIC12□□□□□ -0.49
Col8a1Q00780 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Col8a1Q00780 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Gm2495-201ENSMUST00000191160 466 ntBASIC12□□□□□ -0.49
Col8a1Q00780 Gm37230-201ENSMUST00000194491 818 ntBASIC12□□□□□ -0.49
Col8a1Q00780 Gm37466-201ENSMUST00000195692 652 ntBASIC12□□□□□ -0.49
Col8a1Q00780 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Col8a1Q00780 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC12□□□□□ -0.49
Col8a1Q00780 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC12□□□□□ -0.49
Col8a1Q00780 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC12□□□□□ -0.49
Col8a1Q00780 CT485787.1-201ENSMUST00000225617 968 ntBASIC12□□□□□ -0.49
Col8a1Q00780 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
Col8a1Q00780 Gm10584-201ENSMUST00000207036 2628 ntBASIC12□□□□□ -0.49
Col8a1Q00780 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Col8a1Q00780 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC12□□□□□ -0.49
Col8a1Q00780 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms