Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Cux1P53564 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC21.35■■□□□ 1.01
Cux1P53564 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC21.35■■□□□ 1.01
Cux1P53564 Gm43758-201ENSMUST00000199500 367 ntBASIC21.35■■□□□ 1.01
Cux1P53564 CT485787.1-201ENSMUST00000225617 968 ntBASIC21.35■■□□□ 1.01
Cux1P53564 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cux1P53564 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cux1P53564 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Cux1P53564 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cux1P53564 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cux1P53564 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cux1P53564 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cux1P53564 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cux1P53564 Gm13369-201ENSMUST00000119442 987 ntBASIC21.34■■□□□ 1.01
Cux1P53564 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Cux1P53564 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC21.34■■□□□ 1.01
Cux1P53564 AC140406.1-201ENSMUST00000226481 465 ntBASIC21.34■■□□□ 1.01
Cux1P53564 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Cux1P53564 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cux1P53564 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cux1P53564 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Cux1P53564 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cux1P53564 Hnrnpa1-201ENSMUST00000036004 1918 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Cux1P53564 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cux1P53564 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC21.34■■□□□ 1.01
Cux1P53564 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Cux1P53564 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC21.34■■□□□ 1.01
Cux1P53564 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC21.34■■□□□ 1.01
Cux1P53564 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC21.34■■□□□ 1.01
Cux1P53564 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC21.34■■□□□ 1.01
Cux1P53564 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cux1P53564 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC21.34■■□□□ 1.01
Cux1P53564 Cts7-204ENSMUST00000225321 1257 ntBASIC21.34■■□□□ 1.01
Cux1P53564 Gm18630-201ENSMUST00000222109 1397 ntBASIC21.34■■□□□ 1.01
Cux1P53564 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1.01
Cux1P53564 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Cux1P53564 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cux1P53564 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC21.33■■□□□ 1.01
Cux1P53564 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cux1P53564 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC21.33■■□□□ 1.01
Cux1P53564 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC21.33■■□□□ 1.01
Cux1P53564 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Cux1P53564 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cux1P53564 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC21.33■■□□□ 1
Cux1P53564 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC21.33■■□□□ 1
Cux1P53564 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC21.33■■□□□ 1
Cux1P53564 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC21.33■■□□□ 1
Cux1P53564 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC21.33■■□□□ 1
Cux1P53564 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cux1P53564 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cux1P53564 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC21.33■■□□□ 1
Cux1P53564 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC21.33■■□□□ 1
Cux1P53564 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC21.33■■□□□ 1
Cux1P53564 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
Cux1P53564 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Cux1P53564 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC21.33■■□□□ 1
Cux1P53564 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC21.33■■□□□ 1
Cux1P53564 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Cux1P53564 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC21.32■■□□□ 1
Cux1P53564 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Cux1P53564 AC122335.2-201ENSMUST00000213901 6181 ntBASIC21.32■■□□□ 1
Cux1P53564 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Cux1P53564 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cux1P53564 Gm12846-201ENSMUST00000120431 1373 ntBASIC21.32■■□□□ 1
Cux1P53564 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC21.32■■□□□ 1
Cux1P53564 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC21.32■■□□□ 1
Cux1P53564 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Cux1P53564 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cux1P53564 Gm37259-201ENSMUST00000193903 849 ntBASIC21.32■■□□□ 1
Cux1P53564 Gm4959-201ENSMUST00000197271 1044 ntBASIC21.32■■□□□ 1
Cux1P53564 Gm6203-201ENSMUST00000209575 1342 ntBASIC21.32■■□□□ 1
Cux1P53564 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC21.32■■□□□ 1
Cux1P53564 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cux1P53564 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Cux1P53564 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC21.32■■□□□ 1
Cux1P53564 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cux1P53564 Snora73a-201ENSMUST00000082453 205 ntBASIC21.32■■□□□ 1
Cux1P53564 Gm24526-201ENSMUST00000082921 158 ntBASIC21.32■■□□□ 1
Cux1P53564 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cux1P53564 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Cux1P53564 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Cux1P53564 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cux1P53564 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Cux1P53564 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cux1P53564 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC21.31■■□□□ 1
Cux1P53564 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC21.31■■□□□ 1
Cux1P53564 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
Cux1P53564 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Cux1P53564 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC21.31■■□□□ 1
Cux1P53564 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC21.31■■□□□ 1
Cux1P53564 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cux1P53564 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Cux1P53564 Gm18827-201ENSMUST00000188341 790 ntBASIC21.31■■□□□ 1
Cux1P53564 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cux1P53564 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC21.31■■□□□ 1
Cux1P53564 Olfr284-202ENSMUST00000206647 966 ntBASIC21.31■■□□□ 1
Cux1P53564 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC21.31■■□□□ 1
Cux1P53564 Gm10146-201ENSMUST00000072739 309 ntBASIC21.31■■□□□ 1
Cux1P53564 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cux1P53564 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms