Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC14.9□□□□□ -0.02
Shmt1P50431 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Gm22189-201ENSMUST00000103822 86 ntBASIC14.9□□□□□ -0.02
Shmt1P50431 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Shmt1P50431 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Gm7488-201ENSMUST00000117148 684 ntBASIC14.9□□□□□ -0.02
Shmt1P50431 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC14.9□□□□□ -0.02
Shmt1P50431 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
Shmt1P50431 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 0610005C13Rik-201ENSMUST00000209416 856 ntTSL 5 BASIC14.9□□□□□ -0.02
Shmt1P50431 Gm18027-201ENSMUST00000218947 619 ntBASIC14.9□□□□□ -0.02
Shmt1P50431 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Shmt1P50431 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 AC126549.2-201ENSMUST00000223997 1976 ntBASIC14.9□□□□□ -0.02
Shmt1P50431 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Shmt1P50431 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Shmt1P50431 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Shmt1P50431 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC14.89□□□□□ -0.03
Shmt1P50431 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC14.89□□□□□ -0.03
Shmt1P50431 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Shmt1P50431 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Shmt1P50431 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC14.89□□□□□ -0.03
Shmt1P50431 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
Shmt1P50431 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Shmt1P50431 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Shmt1P50431 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC14.89□□□□□ -0.03
Shmt1P50431 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Shmt1P50431 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Shmt1P50431 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Gm37812-201ENSMUST00000195216 2475 ntBASIC14.89□□□□□ -0.03
Shmt1P50431 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Shmt1P50431 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Shmt1P50431 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Shmt1P50431 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Shmt1P50431 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
Shmt1P50431 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Shmt1P50431 Gm10766-202ENSMUST00000194123 606 ntBASIC14.88□□□□□ -0.03
Shmt1P50431 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC14.88□□□□□ -0.03
Shmt1P50431 Gm42612-201ENSMUST00000197986 623 ntBASIC14.88□□□□□ -0.03
Shmt1P50431 Gm43170-201ENSMUST00000199827 612 ntBASIC14.88□□□□□ -0.03
Shmt1P50431 Gm45195-201ENSMUST00000205597 1008 ntBASIC14.88□□□□□ -0.03
Shmt1P50431 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC14.88□□□□□ -0.03
Shmt1P50431 AC135669.1-201ENSMUST00000213585 412 ntBASIC14.88□□□□□ -0.03
Shmt1P50431 Hist1h2al-201ENSMUST00000091708 339 ntBASIC14.88□□□□□ -0.03
Shmt1P50431 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Shmt1P50431 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.88□□□□□ -0.03
Shmt1P50431 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Shmt1P50431 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Shmt1P50431 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Shmt1P50431 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Shmt1P50431 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC14.88□□□□□ -0.03
Shmt1P50431 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Shmt1P50431 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Shmt1P50431 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Shmt1P50431 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Shmt1P50431 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC14.87□□□□□ -0.03
Shmt1P50431 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC14.87□□□□□ -0.03
Shmt1P50431 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Shmt1P50431 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Shmt1P50431 Gm42471-201ENSMUST00000201457 1865 ntBASIC14.87□□□□□ -0.03
Shmt1P50431 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 65.9 ms