Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
RaraP11416 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC15.25■□□□□ 0.03
RaraP11416 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC15.25■□□□□ 0.03
RaraP11416 AC155252.2-201ENSMUST00000226946 680 ntBASIC15.25■□□□□ 0.03
RaraP11416 AC121598.1-201ENSMUST00000228224 1019 ntBASIC15.25■□□□□ 0.03
RaraP11416 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
RaraP11416 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RaraP11416 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RaraP11416 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC15.24■□□□□ 0.03
RaraP11416 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
RaraP11416 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Maged2-204ENSMUST00000112700 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC15.24■□□□□ 0.03
RaraP11416 Gm15957-201ENSMUST00000118893 974 ntBASIC15.24■□□□□ 0.03
RaraP11416 Gm15467-201ENSMUST00000120582 445 ntBASIC15.24■□□□□ 0.03
RaraP11416 Gm11745-201ENSMUST00000121669 448 ntBASIC15.24■□□□□ 0.03
RaraP11416 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RaraP11416 Gm18737-201ENSMUST00000173594 937 ntBASIC15.24■□□□□ 0.03
RaraP11416 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC15.24■□□□□ 0.03
RaraP11416 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC15.24■□□□□ 0.03
RaraP11416 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
RaraP11416 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Gsdmd-201ENSMUST00000023238 1776 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
RaraP11416 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RaraP11416 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Gm38197-201ENSMUST00000192320 2122 ntBASIC15.23■□□□□ 0.03
RaraP11416 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC15.23■□□□□ 0.03
RaraP11416 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Kcnj3-203ENSMUST00000112633 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Peli3-202ENSMUST00000120475 2988 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
RaraP11416 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
RaraP11416 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC15.23■□□□□ 0.03
RaraP11416 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC15.23■□□□□ 0.03
RaraP11416 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC15.23■□□□□ 0.03
RaraP11416 Gm27525-201ENSMUST00000184465 107 ntBASIC15.23■□□□□ 0.03
RaraP11416 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
RaraP11416 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
RaraP11416 Gm38225-201ENSMUST00000194001 393 ntBASIC15.23■□□□□ 0.03
RaraP11416 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
RaraP11416 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
RaraP11416 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC15.23■□□□□ 0.03
RaraP11416 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
RaraP11416 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms