Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC11.03□□□□□ -0.64
Hoxd3P09027 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC11.03□□□□□ -0.64
Hoxd3P09027 Gm45484-201ENSMUST00000210310 1141 ntBASIC11.03□□□□□ -0.64
Hoxd3P09027 AC079680.1-201ENSMUST00000218730 649 ntTSL 5 BASIC11.03□□□□□ -0.64
Hoxd3P09027 Gm9229-201ENSMUST00000222777 126 ntBASIC11.03□□□□□ -0.64
Hoxd3P09027 AC238811.1-201ENSMUST00000225302 441 ntBASIC11.03□□□□□ -0.64
Hoxd3P09027 AC132863.2-201ENSMUST00000226643 799 ntBASIC11.03□□□□□ -0.64
Hoxd3P09027 Wdyhv1-206ENSMUST00000227142 786 ntBASIC11.03□□□□□ -0.64
Hoxd3P09027 AC121598.1-201ENSMUST00000228224 1019 ntBASIC11.03□□□□□ -0.64
Hoxd3P09027 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Hoxd3P09027 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Gm10478-201ENSMUST00000084451 396 ntBASIC11.03□□□□□ -0.64
Hoxd3P09027 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Gm37912-201ENSMUST00000191895 3076 ntBASIC11.03□□□□□ -0.64
Hoxd3P09027 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Hoxd3P09027 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC11.03□□□□□ -0.64
Hoxd3P09027 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Hoxd3P09027 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Hoxd3P09027 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Hoxd3P09027 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hoxd3P09027 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hoxd3P09027 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hoxd3P09027 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Hoxd3P09027 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
Hoxd3P09027 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hoxd3P09027 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hoxd3P09027 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.64
Hoxd3P09027 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC11.02□□□□□ -0.64
Hoxd3P09027 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hoxd3P09027 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Hoxd3P09027 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Ap5m1-205ENSMUST00000227431 3757 ntBASIC11.02□□□□□ -0.65
Hoxd3P09027 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Cd63-ps-201ENSMUST00000145417 875 ntBASIC11.02□□□□□ -0.65
Hoxd3P09027 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Hoxd3P09027 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Olfr258-ps1-202ENSMUST00000218625 1085 ntTSL 5 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Arhgef33-209ENSMUST00000225223 714 ntBASIC11.02□□□□□ -0.65
Hoxd3P09027 AC156016.3-201ENSMUST00000228623 344 ntBASIC11.02□□□□□ -0.65
Hoxd3P09027 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 BC001981-202ENSMUST00000191393 1545 ntBASIC11.02□□□□□ -0.65
Hoxd3P09027 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Tnn-201ENSMUST00000039178 5817 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC11.02□□□□□ -0.65
Hoxd3P09027 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Hoxd3P09027 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Hoxd3P09027 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Hoxd3P09027 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hoxd3P09027 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hoxd3P09027 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC11.01□□□□□ -0.65
Hoxd3P09027 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hoxd3P09027 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hoxd3P09027 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Hoxd3P09027 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Hoxd3P09027 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC11.01□□□□□ -0.65
Hoxd3P09027 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Hoxd3P09027 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms