Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Trav13-3-201ENSMUST00000117226 336 ntBASIC11.68□□□□□ -0.54
Hmgb3O54879 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC11.68□□□□□ -0.54
Hmgb3O54879 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
Hmgb3O54879 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC11.68□□□□□ -0.54
Hmgb3O54879 AC155729.1-201ENSMUST00000227758 544 ntBASIC11.68□□□□□ -0.54
Hmgb3O54879 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC11.68□□□□□ -0.54
Hmgb3O54879 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC11.68□□□□□ -0.54
Hmgb3O54879 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC11.68□□□□□ -0.54
Hmgb3O54879 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC11.68□□□□□ -0.54
Hmgb3O54879 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Hmgb3O54879 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
Hmgb3O54879 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Sez6l-202ENSMUST00000079491 5857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
Hmgb3O54879 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC11.68□□□□□ -0.54
Hmgb3O54879 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Hmgb3O54879 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC11.67□□□□□ -0.54
Hmgb3O54879 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
Hmgb3O54879 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Gm11185-201ENSMUST00000117732 1007 ntBASIC11.67□□□□□ -0.54
Hmgb3O54879 AA414768-201ENSMUST00000121924 1257 ntBASIC11.67□□□□□ -0.54
Hmgb3O54879 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 AC151836.1-202ENSMUST00000226259 753 ntBASIC11.67□□□□□ -0.54
Hmgb3O54879 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Hmgb3O54879 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Hmgb3O54879 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Frmpd1-202ENSMUST00000107804 5241 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Hmgb3O54879 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Hmgb3O54879 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Twistnb-201ENSMUST00000020877 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Hmgb3O54879 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Hmgb3O54879 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Hmgb3O54879 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Hmgb3O54879 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC11.66□□□□□ -0.54
Hmgb3O54879 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Hmgb3O54879 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Hmgb3O54879 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Hmgb3O54879 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Hmgb3O54879 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC11.66□□□□□ -0.54
Hmgb3O54879 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC11.66□□□□□ -0.54
Hmgb3O54879 AC124569.2-201ENSMUST00000225998 818 ntBASIC11.66□□□□□ -0.54
Hmgb3O54879 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Hmgb3O54879 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Hmgb3O54879 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 69.1 ms