Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Scn4aQ9ER60 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Scn4aQ9ER60 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Gm7666-201ENSMUST00000146631 819 ntBASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Gm25043-201ENSMUST00000158604 212 ntBASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Gm5778-201ENSMUST00000171003 1072 ntBASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Scn4aQ9ER60 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Pax5-203ENSMUST00000107825 1445 ntTSL 5 BASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Gm38049-201ENSMUST00000195698 1372 ntBASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Scn4aQ9ER60 Gm15897-201ENSMUST00000117770 1486 ntBASIC18.82■□□□□ 0.6
Scn4aQ9ER60 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn4aQ9ER60 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC18.82■□□□□ 0.6
Scn4aQ9ER60 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn4aQ9ER60 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC18.82■□□□□ 0.6
Scn4aQ9ER60 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Scn4aQ9ER60 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC18.82■□□□□ 0.6
Scn4aQ9ER60 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn4aQ9ER60 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Scn4aQ9ER60 Gm2546-201ENSMUST00000182630 991 ntBASIC18.82■□□□□ 0.6
Scn4aQ9ER60 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC18.82■□□□□ 0.6
Scn4aQ9ER60 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn4aQ9ER60 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn4aQ9ER60 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Scn4aQ9ER60 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Gng12-205ENSMUST00000114226 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Gm12286-201ENSMUST00000119246 1002 ntBASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Hsh2d-202ENSMUST00000165324 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Gm5597-201ENSMUST00000182353 1193 ntBASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Gm3096-201ENSMUST00000185770 364 ntBASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Gm37905-201ENSMUST00000195310 341 ntBASIC18.81■□□□□ 0.6
Scn4aQ9ER60 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 AC123665.1-201ENSMUST00000228204 438 ntBASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Gm13875-201ENSMUST00000120162 282 ntBASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Gm7848-201ENSMUST00000210739 718 ntBASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Gm5950-201ENSMUST00000213337 772 ntBASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Olfr462-201ENSMUST00000049743 936 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Scn4aQ9ER60 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Fam129a-203ENSMUST00000111875 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Gm38144-201ENSMUST00000192790 465 ntBASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Tnk2os-201ENSMUST00000141256 1392 ntTSL 2 BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Scn4aQ9ER60 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Gm43908-201ENSMUST00000205074 1472 ntBASIC18.79■□□□□ 0.6
Scn4aQ9ER60 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms