Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Gm44608-201ENSMUST00000206827 855 ntBASIC16.11■□□□□ 0.17
Trim11Q99PQ2 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim11Q99PQ2 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Gm25287-201ENSMUST00000103846 110 ntBASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Gm22918-201ENSMUST00000103855 110 ntBASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Gm6222-201ENSMUST00000120787 396 ntBASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 AC225888.1-201ENSMUST00000227184 728 ntBASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
Trim11Q99PQ2 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 2610028D06Rik-201ENSMUST00000215216 1713 ntBASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Gm9824-201ENSMUST00000178707 561 ntBASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Mir6990-201ENSMUST00000183724 91 ntBASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 AA619741-201ENSMUST00000195095 646 ntBASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Gm44291-201ENSMUST00000203102 2865 ntBASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trim11Q99PQ2 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trim11Q99PQ2 Taf2-201ENSMUST00000041733 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms