Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Gm5303-201ENSMUST00000117943 1252 ntBASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Gm29741-201ENSMUST00000192667 421 ntBASIC19.29■□□□□ 0.68
Usp40Q8BWR4 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Usp40Q8BWR4 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 AC168058.1-201ENSMUST00000219521 2282 ntBASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 4933430H06Rik-201ENSMUST00000200924 1343 ntBASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Mir1894-201ENSMUST00000122802 81 ntBASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Gm27772-201ENSMUST00000184900 187 ntBASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 AC161252.3-201ENSMUST00000225465 1549 ntBASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Usp40Q8BWR4 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 AC131690.1-201ENSMUST00000218406 374 ntBASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Usp40Q8BWR4 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Usp40Q8BWR4 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp40Q8BWR4 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Usp40Q8BWR4 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Gm12485-201ENSMUST00000119641 291 ntBASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Gm12416-201ENSMUST00000120911 1008 ntBASIC19.26■□□□□ 0.67
Usp40Q8BWR4 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Usp40Q8BWR4 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Gm8775-201ENSMUST00000170943 1327 ntBASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC19.25■□□□□ 0.67
Usp40Q8BWR4 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms