Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Gm22189-201ENSMUST00000103822 86 ntBASIC16.65■□□□□ 0.26
Trim56Q80VI1 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Gldnos-201ENSMUST00000149237 841 ntTSL 2 BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Gm6218-201ENSMUST00000219812 628 ntBASIC16.65■□□□□ 0.26
Trim56Q80VI1 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Gm5421-201ENSMUST00000181698 2354 ntBASIC16.65■□□□□ 0.26
Trim56Q80VI1 Gm12020-201ENSMUST00000119030 2042 ntBASIC16.65■□□□□ 0.26
Trim56Q80VI1 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC16.65■□□□□ 0.26
Trim56Q80VI1 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim56Q80VI1 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Trim56Q80VI1 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 CT030704.2-201ENSMUST00000228887 494 ntBASIC16.64■□□□□ 0.25
Trim56Q80VI1 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Hist1h2al-201ENSMUST00000091708 339 ntBASIC16.64■□□□□ 0.25
Trim56Q80VI1 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Ppt2-201ENSMUST00000064953 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim56Q80VI1 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Gm3365-201ENSMUST00000216296 1480 ntBASIC16.63■□□□□ 0.25
Trim56Q80VI1 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Gm6283-201ENSMUST00000182369 1000 ntBASIC16.63■□□□□ 0.25
Trim56Q80VI1 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC16.63■□□□□ 0.25
Trim56Q80VI1 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Mir497b-201ENSMUST00000093601 125 ntBASIC16.63■□□□□ 0.25
Trim56Q80VI1 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Trim56Q80VI1 AC114543.1-201ENSMUST00000226451 1558 ntBASIC16.63■□□□□ 0.25
Trim56Q80VI1 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim56Q80VI1 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim56Q80VI1 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Trim56Q80VI1 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim56Q80VI1 Gm45195-201ENSMUST00000205597 1008 ntBASIC16.62■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms