Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Gm12428-201ENSMUST00000119844 727 ntBASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 AA543401-201ENSMUST00000164248 1269 ntBASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Gm6888-201ENSMUST00000221983 706 ntBASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Upf3bQ3ULL6 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Gm15653-201ENSMUST00000119247 907 ntBASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Gm44608-201ENSMUST00000206827 855 ntBASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 AC121804.3-201ENSMUST00000223420 295 ntBASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Upf3bQ3ULL6 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 AC159621.2-201ENSMUST00000223519 1326 ntBASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Upf3bQ3ULL6 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Upf3bQ3ULL6 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms