Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Gm6007-201ENSMUST00000208170 823 ntBASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Upf3aQ3ULJ3 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 AL645783.1-201ENSMUST00000221416 1832 ntBASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Gm12928-201ENSMUST00000117115 573 ntBASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Gm12742-201ENSMUST00000117326 410 ntBASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Gm11814-201ENSMUST00000119515 929 ntBASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Selenoh-205ENSMUST00000189636 499 ntAPPRIS ALT2 TSL 3 BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Gm9200-201ENSMUST00000118513 1354 ntBASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Upf3aQ3ULJ3 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Gm4081-201ENSMUST00000195287 1838 ntBASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Gm13226-201ENSMUST00000117838 404 ntBASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Gm12416-201ENSMUST00000120911 1008 ntBASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Gm27772-201ENSMUST00000184900 187 ntBASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Gm8775-201ENSMUST00000170943 1327 ntBASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Ssr1-204ENSMUST00000225319 1610 ntBASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Upf3aQ3ULJ3 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3aQ3ULJ3 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3aQ3ULJ3 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3aQ3ULJ3 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3aQ3ULJ3 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3aQ3ULJ3 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3aQ3ULJ3 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC14.79□□□□□ -0.04
Upf3aQ3ULJ3 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3aQ3ULJ3 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC14.79□□□□□ -0.04
Upf3aQ3ULJ3 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Upf3aQ3ULJ3 Gm12957-201ENSMUST00000117835 377 ntBASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms