Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
Cdh11P55288 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdh11P55288 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdh11P55288 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdh11P55288 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdh11P55288 Gm13332-201ENSMUST00000120451 1398 ntBASIC12.9□□□□□ -0.34
Cdh11P55288 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdh11P55288 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdh11P55288 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdh11P55288 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC12.9□□□□□ -0.34
Cdh11P55288 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdh11P55288 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdh11P55288 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdh11P55288 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Cdh11P55288 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
Cdh11P55288 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Cdh11P55288 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Cdh11P55288 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.35
Cdh11P55288 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Cdh11P55288 AC130669.1-201ENSMUST00000228537 1672 ntBASIC12.89□□□□□ -0.35
Cdh11P55288 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC12.89□□□□□ -0.35
Cdh11P55288 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Cdh11P55288 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Cdh11P55288 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Cdh11P55288 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC12.89□□□□□ -0.35
Cdh11P55288 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC12.89□□□□□ -0.35
Cdh11P55288 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC12.89□□□□□ -0.35
Cdh11P55288 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
Cdh11P55288 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC12.89□□□□□ -0.35
Cdh11P55288 Gpr146-202ENSMUST00000053120 1040 ntBASIC12.89□□□□□ -0.35
Cdh11P55288 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Cdh11P55288 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC12.89□□□□□ -0.35
Cdh11P55288 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Tcn2-204ENSMUST00000109990 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Aste1-201ENSMUST00000035181 2755 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
Cdh11P55288 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Cdh11P55288 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Cdh11P55288 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
Cdh11P55288 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC12.88□□□□□ -0.35
Cdh11P55288 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Cdh11P55288 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Cdh11P55288 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Cdh11P55288 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC12.88□□□□□ -0.35
Cdh11P55288 Gm13365-201ENSMUST00000121188 973 ntBASIC12.88□□□□□ -0.35
Cdh11P55288 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Gm2272-201ENSMUST00000194903 582 ntBASIC12.88□□□□□ -0.35
Cdh11P55288 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC12.88□□□□□ -0.35
Cdh11P55288 Gm44335-201ENSMUST00000196879 141 ntBASIC12.88□□□□□ -0.35
Cdh11P55288 Gm44297-201ENSMUST00000198304 141 ntBASIC12.88□□□□□ -0.35
Cdh11P55288 Gm44346-201ENSMUST00000198851 141 ntBASIC12.88□□□□□ -0.35
Cdh11P55288 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC12.88□□□□□ -0.35
Cdh11P55288 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
Cdh11P55288 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Cdh11P55288 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC12.88□□□□□ -0.35
Cdh11P55288 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
Cdh11P55288 Mfn2-202ENSMUST00000105714 2427 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Cdh11P55288 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
Cdh11P55288 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Cdh11P55288 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms