Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC11.45□□□□□ -0.58
Cdx1P18111 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC11.45□□□□□ -0.58
Cdx1P18111 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC11.45□□□□□ -0.58
Cdx1P18111 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC11.45□□□□□ -0.58
Cdx1P18111 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Cdx1P18111 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC11.45□□□□□ -0.58
Cdx1P18111 Gm27628-201ENSMUST00000184911 107 ntBASIC11.45□□□□□ -0.58
Cdx1P18111 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC11.45□□□□□ -0.58
Cdx1P18111 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC11.45□□□□□ -0.58
Cdx1P18111 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC11.45□□□□□ -0.58
Cdx1P18111 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Cdx1P18111 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Cdx1P18111 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Cdx1P18111 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC11.44□□□□□ -0.58
Cdx1P18111 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 AC131586.3-201ENSMUST00000228355 1367 ntBASIC11.44□□□□□ -0.58
Cdx1P18111 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC11.44□□□□□ -0.58
Cdx1P18111 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC11.44□□□□□ -0.58
Cdx1P18111 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC11.44□□□□□ -0.58
Cdx1P18111 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC11.44□□□□□ -0.58
Cdx1P18111 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC11.44□□□□□ -0.58
Cdx1P18111 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC11.44□□□□□ -0.58
Cdx1P18111 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC11.44□□□□□ -0.58
Cdx1P18111 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Cdx1P18111 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Cdx1P18111 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Cdx1P18111 Rfx1-204ENSMUST00000211046 3677 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Cdx1P18111 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 AC132265.1-201ENSMUST00000219233 1665 ntBASIC11.43□□□□□ -0.58
Cdx1P18111 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 AC121801.1-201ENSMUST00000225363 1899 ntBASIC11.43□□□□□ -0.58
Cdx1P18111 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Cdx1P18111 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC11.43□□□□□ -0.58
Cdx1P18111 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC11.43□□□□□ -0.58
Cdx1P18111 Gm11764-201ENSMUST00000120221 623 ntBASIC11.43□□□□□ -0.58
Cdx1P18111 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC11.43□□□□□ -0.58
Cdx1P18111 Gm24513-201ENSMUST00000174964 138 ntBASIC11.43□□□□□ -0.58
Cdx1P18111 Gm27397-201ENSMUST00000184997 107 ntBASIC11.43□□□□□ -0.58
Cdx1P18111 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
Cdx1P18111 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Cdx1P18111 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms