Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC12.57□□□□□ -0.4
Col5a1O88207 Gm18473-201ENSMUST00000220543 868 ntBASIC12.57□□□□□ -0.4
Col5a1O88207 CT573034.1-201ENSMUST00000222983 313 ntBASIC12.57□□□□□ -0.4
Col5a1O88207 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col5a1O88207 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col5a1O88207 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC12.57□□□□□ -0.4
Col5a1O88207 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col5a1O88207 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col5a1O88207 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col5a1O88207 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
Col5a1O88207 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col5a1O88207 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col5a1O88207 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Col5a1O88207 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col5a1O88207 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col5a1O88207 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Col5a1O88207 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Col5a1O88207 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Col5a1O88207 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC12.56□□□□□ -0.4
Col5a1O88207 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC12.56□□□□□ -0.4
Col5a1O88207 Gm11557-201ENSMUST00000120200 1008 ntBASIC12.56□□□□□ -0.4
Col5a1O88207 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC12.56□□□□□ -0.4
Col5a1O88207 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.56□□□□□ -0.4
Col5a1O88207 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Col5a1O88207 Gm8927-201ENSMUST00000181978 981 ntBASIC12.56□□□□□ -0.4
Col5a1O88207 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC12.56□□□□□ -0.4
Col5a1O88207 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC12.56□□□□□ -0.4
Col5a1O88207 Gm44364-201ENSMUST00000198368 141 ntBASIC12.56□□□□□ -0.4
Col5a1O88207 AC073947.2-201ENSMUST00000215888 1130 ntBASIC12.56□□□□□ -0.4
Col5a1O88207 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Col5a1O88207 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Gm3222-201ENSMUST00000071282 990 ntBASIC12.56□□□□□ -0.4
Col5a1O88207 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Col5a1O88207 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC12.56□□□□□ -0.4
Col5a1O88207 Gm37411-201ENSMUST00000194180 2282 ntBASIC12.56□□□□□ -0.4
Col5a1O88207 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Col5a1O88207 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Col5a1O88207 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Col5a1O88207 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Col5a1O88207 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
Col5a1O88207 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Gm2383-201ENSMUST00000181461 807 ntBASIC12.55□□□□□ -0.4
Col5a1O88207 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Rpl10a-201ENSMUST00000042334 829 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC12.55□□□□□ -0.4
Col5a1O88207 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC12.55□□□□□ -0.4
Col5a1O88207 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Col5a1O88207 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
Col5a1O88207 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Gm12749-201ENSMUST00000122138 1159 ntBASIC12.55□□□□□ -0.4
Col5a1O88207 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Gm6334-201ENSMUST00000207083 228 ntBASIC12.55□□□□□ -0.4
Col5a1O88207 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC12.55□□□□□ -0.4
Col5a1O88207 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Col5a1O88207 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Col5a1O88207 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Col5a1O88207 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Col5a1O88207 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC12.54□□□□□ -0.4
Col5a1O88207 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.54□□□□□ -0.4
Col5a1O88207 Ccdc70-201ENSMUST00000017193 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Col5a1O88207 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.54□□□□□ -0.4
Col5a1O88207 Rps4l-202ENSMUST00000204242 789 ntBASIC12.54□□□□□ -0.4
Col5a1O88207 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms