Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Cpsf1Q9EPU4 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Cpsf1Q9EPU4 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC19.33■□□□□ 0.69
Cpsf1Q9EPU4 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Gm5161-201ENSMUST00000075243 853 ntBASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Cpsf1Q9EPU4 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cpsf1Q9EPU4 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Gm7446-201ENSMUST00000221035 1240 ntBASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Cpsf1Q9EPU4 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Gm37812-201ENSMUST00000195216 2475 ntBASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cpsf1Q9EPU4 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cpsf1Q9EPU4 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms