Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Ccdc40Q8BI79 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc40Q8BI79 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Ccdc40Q8BI79 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Ccdc40Q8BI79 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc40Q8BI79 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc40Q8BI79 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ccdc40Q8BI79 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Gm27920-201ENSMUST00000183953 96 ntBASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Gm27525-201ENSMUST00000184465 107 ntBASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Gpr146-202ENSMUST00000053120 1040 ntBASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ccdc40Q8BI79 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Gm37230-201ENSMUST00000194491 818 ntBASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Gm5712-201ENSMUST00000199748 1043 ntBASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Klk2-ps-201ENSMUST00000205342 571 ntBASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Ccdc40Q8BI79 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Gm9252-201ENSMUST00000172364 1602 ntBASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Gm20553-201ENSMUST00000204205 844 ntBASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Il12rb1-205ENSMUST00000212657 2741 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Ccdc40Q8BI79 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC14.79□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms