Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Trim41Q5NCC3 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Trim41Q5NCC3 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
Trim41Q5NCC3 Mir877-201ENSMUST00000104738 85 ntBASIC24.47■■□□□ 1.51
Trim41Q5NCC3 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Trim41Q5NCC3 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Trim41Q5NCC3 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC24.47■■□□□ 1.51
Trim41Q5NCC3 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC24.47■■□□□ 1.51
Trim41Q5NCC3 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Trim41Q5NCC3 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Trim41Q5NCC3 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Trim41Q5NCC3 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Trim41Q5NCC3 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Gm7783-201ENSMUST00000204795 781 ntBASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Trim41Q5NCC3 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
Trim41Q5NCC3 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
Trim41Q5NCC3 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC24.45■■□□□ 1.51
Trim41Q5NCC3 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.51
Trim41Q5NCC3 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC24.45■■□□□ 1.51
Trim41Q5NCC3 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.51
Trim41Q5NCC3 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Gm18558-201ENSMUST00000186253 1214 ntBASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Gm18905-201ENSMUST00000205454 928 ntBASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Gm17794-201ENSMUST00000220252 955 ntBASIC24.45■■□□□ 1.5
Trim41Q5NCC3 AC156560.2-201ENSMUST00000221232 264 ntBASIC24.45■■□□□ 1.5
Trim41Q5NCC3 CT573034.1-201ENSMUST00000222983 313 ntBASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Trim41Q5NCC3 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Gm24514-201ENSMUST00000174961 285 ntBASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Gm8565-201ENSMUST00000183259 1014 ntBASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Gm9299-201ENSMUST00000206392 1140 ntBASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Gm18307-201ENSMUST00000206864 949 ntBASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Gm29787-201ENSMUST00000222129 849 ntBASIC24.44■■□□□ 1.5
Trim41Q5NCC3 AC122459.1-201ENSMUST00000228373 885 ntBASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Trim41Q5NCC3 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Trim41Q5NCC3 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC24.43■■□□□ 1.5
Trim41Q5NCC3 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Trim41Q5NCC3 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Trim41Q5NCC3 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Trim41Q5NCC3 Gm11628-201ENSMUST00000117568 171 ntBASIC24.43■■□□□ 1.5
Trim41Q5NCC3 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC24.43■■□□□ 1.5
Trim41Q5NCC3 Gm27516-201ENSMUST00000184237 98 ntBASIC24.43■■□□□ 1.5
Trim41Q5NCC3 Gm27486-201ENSMUST00000184923 80 ntBASIC24.43■■□□□ 1.5
Trim41Q5NCC3 AC155258.1-201ENSMUST00000219303 253 ntBASIC24.43■■□□□ 1.5
Trim41Q5NCC3 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Trim41Q5NCC3 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC24.43■■□□□ 1.5
Trim41Q5NCC3 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Trim41Q5NCC3 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
Trim41Q5NCC3 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Trim41Q5NCC3 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Trim41Q5NCC3 Ptprs-211ENSMUST00000223859 5588 ntBASIC24.42■■□□□ 1.5
Trim41Q5NCC3 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Trim41Q5NCC3 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC24.42■■□□□ 1.5
Trim41Q5NCC3 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC24.42■■□□□ 1.5
Trim41Q5NCC3 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
Trim41Q5NCC3 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Trim41Q5NCC3 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC24.42■■□□□ 1.5
Trim41Q5NCC3 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC24.42■■□□□ 1.5
Trim41Q5NCC3 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms