Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gm7003-201ENSMUST00000195089 312 ntBASIC21.3■■□□□ 1
Col17a1Q07563 Gm8913-201ENSMUST00000209491 641 ntBASIC21.3■■□□□ 1
Col17a1Q07563 AC161537.1-201ENSMUST00000226199 1015 ntBASIC21.3■■□□□ 1
Col17a1Q07563 AL732506.1-201ENSMUST00000226420 281 ntBASIC21.3■■□□□ 1
Col17a1Q07563 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Col17a1Q07563 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col17a1Q07563 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC21.3■■□□□ 1
Col17a1Q07563 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col17a1Q07563 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC21.3■■□□□ 1
Col17a1Q07563 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col17a1Q07563 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Col17a1Q07563 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col17a1Q07563 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col17a1Q07563 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Col17a1Q07563 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC21.29■■□□□ 1
Col17a1Q07563 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
Col17a1Q07563 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col17a1Q07563 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC21.29■■□□□ 1
Col17a1Q07563 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC21.29■■□□□ 1
Col17a1Q07563 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC21.29■■□□□ 1
Col17a1Q07563 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC21.29■■□□□ 1
Col17a1Q07563 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col17a1Q07563 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Col17a1Q07563 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col17a1Q07563 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC21.29■■□□□ 1
Col17a1Q07563 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Col17a1Q07563 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Col17a1Q07563 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Col17a1Q07563 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col17a1Q07563 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col17a1Q07563 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC21.28■■□□□ 1
Col17a1Q07563 Gm19353-201ENSMUST00000184561 445 ntBASIC21.28■■□□□ 1
Col17a1Q07563 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC21.28■■□□□ 1
Col17a1Q07563 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC21.28■■□□□ 1
Col17a1Q07563 Gm19163-201ENSMUST00000223313 780 ntBASIC21.28■■□□□ 1
Col17a1Q07563 AC140375.1-201ENSMUST00000225421 694 ntBASIC21.28■■□□□ 1
Col17a1Q07563 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col17a1Q07563 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col17a1Q07563 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC21.28■■□□□ 1
Col17a1Q07563 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Col17a1Q07563 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Col17a1Q07563 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col17a1Q07563 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC21.28■■□□□ 1
Col17a1Q07563 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Col17a1Q07563 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC21.27■■□□□ 1
Col17a1Q07563 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC21.27■■□□□ 1
Col17a1Q07563 Gm8738-201ENSMUST00000172606 329 ntBASIC21.27■■□□□ 1
Col17a1Q07563 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC21.27■■□□□ 1
Col17a1Q07563 Gm8492-201ENSMUST00000182375 987 ntBASIC21.27■■□□□ 1
Col17a1Q07563 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
Col17a1Q07563 Gm9004-201ENSMUST00000218739 1222 ntBASIC21.27■■□□□ 1
Col17a1Q07563 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC21.27■■□□□ 1
Col17a1Q07563 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC21.27■■□□□ 1
Col17a1Q07563 AC123665.1-201ENSMUST00000228204 438 ntBASIC21.27■■□□□ 1
Col17a1Q07563 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC21.27■■□□□ 1
Col17a1Q07563 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Col17a1Q07563 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Col17a1Q07563 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Col17a1Q07563 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col17a1Q07563 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Col17a1Q07563 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Col17a1Q07563 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Col17a1Q07563 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC21.27■□□□□ 0.99
Col17a1Q07563 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Col17a1Q07563 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
Col17a1Q07563 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
Col17a1Q07563 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC21.26■□□□□ 0.99
Col17a1Q07563 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Gm43610-201ENSMUST00000199117 365 ntBASIC21.26■□□□□ 0.99
Col17a1Q07563 Gm19963-201ENSMUST00000208413 1255 ntBASIC21.26■□□□□ 0.99
Col17a1Q07563 Gm19640-201ENSMUST00000214849 464 ntBASIC21.26■□□□□ 0.99
Col17a1Q07563 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Col17a1Q07563 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Gm43908-201ENSMUST00000205074 1472 ntBASIC21.26■□□□□ 0.99
Col17a1Q07563 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col17a1Q07563 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms