Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Gm17420-201ENSMUST00000164753 153 ntBASIC17.82■□□□□ 0.44
Msh6P54276 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
Msh6P54276 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC17.82■□□□□ 0.44
Msh6P54276 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC17.82■□□□□ 0.44
Msh6P54276 Gm9728-201ENSMUST00000200197 1055 ntBASIC17.82■□□□□ 0.44
Msh6P54276 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
Msh6P54276 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh6P54276 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 Gm11524-201ENSMUST00000119349 807 ntBASIC17.81■□□□□ 0.44
Msh6P54276 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC17.81■□□□□ 0.44
Msh6P54276 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC17.81■□□□□ 0.44
Msh6P54276 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 AC192088.1-201ENSMUST00000227561 301 ntBASIC17.81■□□□□ 0.44
Msh6P54276 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 Gm8399-201ENSMUST00000082300 1117 ntBASIC17.81■□□□□ 0.44
Msh6P54276 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC17.81■□□□□ 0.44
Msh6P54276 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Msh6P54276 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh6P54276 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh6P54276 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Msh6P54276 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh6P54276 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC17.8■□□□□ 0.44
Msh6P54276 Gm15198-201ENSMUST00000117283 177 ntBASIC17.8■□□□□ 0.44
Msh6P54276 Trav4d-2-201ENSMUST00000120914 335 ntBASIC17.8■□□□□ 0.44
Msh6P54276 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC17.8■□□□□ 0.44
Msh6P54276 CT030704.2-201ENSMUST00000228887 494 ntBASIC17.8■□□□□ 0.44
Msh6P54276 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC17.8■□□□□ 0.44
Msh6P54276 Gm6091-201ENSMUST00000098307 165 ntBASIC17.8■□□□□ 0.44
Msh6P54276 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC17.8■□□□□ 0.44
Msh6P54276 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Msh6P54276 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh6P54276 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh6P54276 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh6P54276 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh6P54276 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh6P54276 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh6P54276 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 Gm12928-201ENSMUST00000117115 573 ntBASIC17.79■□□□□ 0.44
Msh6P54276 Gm15376-201ENSMUST00000122258 783 ntBASIC17.79■□□□□ 0.44
Msh6P54276 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC17.79■□□□□ 0.44
Msh6P54276 Gm43094-201ENSMUST00000196549 921 ntBASIC17.79■□□□□ 0.44
Msh6P54276 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC17.79■□□□□ 0.44
Msh6P54276 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 Zscan30-202ENSMUST00000224144 1458 ntBASIC17.79■□□□□ 0.44
Msh6P54276 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Msh6P54276 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC17.79■□□□□ 0.44
Msh6P54276 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Msh6P54276 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 AC114543.1-201ENSMUST00000226451 1558 ntBASIC17.79■□□□□ 0.44
Msh6P54276 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Msh6P54276 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Msh6P54276 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Msh6P54276 AC168058.1-201ENSMUST00000219521 2282 ntBASIC17.79■□□□□ 0.44
Msh6P54276 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Msh6P54276 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Msh6P54276 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC17.79■□□□□ 0.44
Msh6P54276 Gm24196-201ENSMUST00000179161 110 ntBASIC17.79■□□□□ 0.44
Msh6P54276 Gm27731-201ENSMUST00000185192 107 ntBASIC17.79■□□□□ 0.44
Msh6P54276 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC17.79■□□□□ 0.44
Msh6P54276 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC17.79■□□□□ 0.44
Msh6P54276 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh6P54276 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC17.78■□□□□ 0.44
Msh6P54276 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh6P54276 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msh6P54276 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh6P54276 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms