Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC13.4□□□□□ -0.26
Cdx2P43241 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx2P43241 Carlr-201ENSMUST00000181515 2574 ntBASIC13.4□□□□□ -0.26
Cdx2P43241 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx2P43241 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx2P43241 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx2P43241 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
Cdx2P43241 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx2P43241 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC13.4□□□□□ -0.26
Cdx2P43241 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx2P43241 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx2P43241 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC13.4□□□□□ -0.26
Cdx2P43241 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC13.4□□□□□ -0.26
Cdx2P43241 Tmem52-204ENSMUST00000178188 908 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
Cdx2P43241 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx2P43241 Gm29649-201ENSMUST00000185649 419 ntBASIC13.4□□□□□ -0.26
Cdx2P43241 Gm5069-202ENSMUST00000192714 1011 ntBASIC13.4□□□□□ -0.26
Cdx2P43241 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC13.4□□□□□ -0.26
Cdx2P43241 Gm9299-201ENSMUST00000206392 1140 ntBASIC13.4□□□□□ -0.26
Cdx2P43241 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx2P43241 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Cdx2P43241 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.26
Cdx2P43241 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Cdx2P43241 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx2P43241 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx2P43241 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx2P43241 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Cdx2P43241 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Cdx2P43241 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC13.4□□□□□ -0.26
Cdx2P43241 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.27
Cdx2P43241 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Cdx2P43241 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC13.39□□□□□ -0.27
Cdx2P43241 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Gm9109-201ENSMUST00000120254 1405 ntBASIC13.39□□□□□ -0.27
Cdx2P43241 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC13.39□□□□□ -0.27
Cdx2P43241 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Cdx2P43241 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
Cdx2P43241 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC13.39□□□□□ -0.27
Cdx2P43241 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC13.39□□□□□ -0.27
Cdx2P43241 Gm24420-201ENSMUST00000176676 59 ntBASIC13.39□□□□□ -0.27
Cdx2P43241 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC13.39□□□□□ -0.27
Cdx2P43241 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC13.39□□□□□ -0.27
Cdx2P43241 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Cdx2P43241 Gm21038-201ENSMUST00000222205 1383 ntBASIC13.39□□□□□ -0.27
Cdx2P43241 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Cdx2P43241 Gm42471-201ENSMUST00000201457 1865 ntBASIC13.39□□□□□ -0.27
Cdx2P43241 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC13.39□□□□□ -0.27
Cdx2P43241 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC13.39□□□□□ -0.27
Cdx2P43241 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Cdx2P43241 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC13.39□□□□□ -0.27
Cdx2P43241 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Cdx2P43241 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Cdx2P43241 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
Cdx2P43241 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC13.38□□□□□ -0.27
Cdx2P43241 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC13.38□□□□□ -0.27
Cdx2P43241 Gm16342-201ENSMUST00000124025 1025 ntBASIC13.38□□□□□ -0.27
Cdx2P43241 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC13.38□□□□□ -0.27
Cdx2P43241 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
Cdx2P43241 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC13.38□□□□□ -0.27
Cdx2P43241 Gm29127-201ENSMUST00000188304 517 ntBASIC13.38□□□□□ -0.27
Cdx2P43241 Ighv1-51-201ENSMUST00000192903 354 ntBASIC13.38□□□□□ -0.27
Cdx2P43241 Gm6983-201ENSMUST00000214912 628 ntBASIC13.38□□□□□ -0.27
Cdx2P43241 AC122459.1-201ENSMUST00000228373 885 ntBASIC13.38□□□□□ -0.27
Cdx2P43241 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Cdx2P43241 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Cdx2P43241 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms