Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lmx1bO88609 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lmx1bO88609 Gtpbp10-211ENSMUST00000198799 648 ntBASIC12.85□□□□□ -0.35
Lmx1bO88609 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lmx1bO88609 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Lmx1bO88609 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lmx1bO88609 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lmx1bO88609 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lmx1bO88609 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lmx1bO88609 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Lmx1bO88609 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lmx1bO88609 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lmx1bO88609 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Lmx1bO88609 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lmx1bO88609 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lmx1bO88609 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Lmx1bO88609 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
Lmx1bO88609 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Lmx1bO88609 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
Lmx1bO88609 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
Lmx1bO88609 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC12.84□□□□□ -0.35
Lmx1bO88609 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Lmx1bO88609 Mir125a-201ENSMUST00000083545 68 ntBASIC12.84□□□□□ -0.35
Lmx1bO88609 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
Lmx1bO88609 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
Lmx1bO88609 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC12.84□□□□□ -0.35
Lmx1bO88609 Gm6263-201ENSMUST00000120029 1342 ntBASIC12.84□□□□□ -0.35
Lmx1bO88609 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC12.84□□□□□ -0.35
Lmx1bO88609 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Lmx1bO88609 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
Lmx1bO88609 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC12.83□□□□□ -0.35
Lmx1bO88609 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
Lmx1bO88609 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Lmx1bO88609 Lpcat1-208ENSMUST00000223060 2141 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Lmx1bO88609 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Lmx1bO88609 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC12.83□□□□□ -0.35
Lmx1bO88609 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Lmx1bO88609 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Lmx1bO88609 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Lmx1bO88609 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Gm15653-201ENSMUST00000119247 907 ntBASIC12.83□□□□□ -0.36
Lmx1bO88609 Rgs20-203ENSMUST00000119256 883 ntAPPRIS ALT2 TSL 3 BASIC12.83□□□□□ -0.36
Lmx1bO88609 Gm15321-201ENSMUST00000121290 288 ntBASIC12.83□□□□□ -0.36
Lmx1bO88609 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Lmx1bO88609 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 H2-Pa-201ENSMUST00000182803 626 ntBASIC12.83□□□□□ -0.36
Lmx1bO88609 Gm29667-201ENSMUST00000190817 490 ntBASIC12.83□□□□□ -0.36
Lmx1bO88609 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC12.83□□□□□ -0.36
Lmx1bO88609 Gm6218-201ENSMUST00000219812 628 ntBASIC12.83□□□□□ -0.36
Lmx1bO88609 AC238811.1-201ENSMUST00000225302 441 ntBASIC12.83□□□□□ -0.36
Lmx1bO88609 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC12.83□□□□□ -0.36
Lmx1bO88609 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 AC167013.2-201ENSMUST00000228520 2684 ntBASIC12.83□□□□□ -0.36
Lmx1bO88609 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC12.83□□□□□ -0.36
Lmx1bO88609 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC12.83□□□□□ -0.36
Lmx1bO88609 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lmx1bO88609 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lmx1bO88609 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms