Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Prpf40aQ9R1C7 Gm43399-201ENSMUST00000202546 2374 ntBASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Gm9824-201ENSMUST00000178707 561 ntBASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Ighv8-7-201ENSMUST00000194349 297 ntBASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 AC155729.1-201ENSMUST00000227758 544 ntBASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Prpf40aQ9R1C7 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Gm6539-201ENSMUST00000119157 1064 ntBASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Gm8116-201ENSMUST00000182917 1201 ntBASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Gm18049-201ENSMUST00000208909 581 ntBASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 AC158529.1-201ENSMUST00000223618 239 ntBASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 AC140397.2-201ENSMUST00000224213 834 ntBASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Gm5867-201ENSMUST00000063197 592 ntBASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Gm9252-201ENSMUST00000172364 1602 ntBASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Prpf40aQ9R1C7 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Trim2-203ENSMUST00000107691 7428 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Gm24158-201ENSMUST00000175263 71 ntBASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Gm10253-201ENSMUST00000194270 940 ntBASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Prpf40aQ9R1C7 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms