Protein–RNA interactions for Protein: Q9JKX8

Upk3a, Uroplakin-3a, mousemouse

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upk3aQ9JKX8 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Upk3aQ9JKX8 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Upk3aQ9JKX8 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upk3aQ9JKX8 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Upk3aQ9JKX8 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Gm3436-201ENSMUST00000179930 840 ntBASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 AC153872.1-201ENSMUST00000199539 128 ntBASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Upk3aQ9JKX8 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Hnf1a-201ENSMUST00000031535 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Gm12020-201ENSMUST00000119030 2042 ntBASIC13.63□□□□□ -0.23
Upk3aQ9JKX8 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 AC159114.1-201ENSMUST00000220349 266 ntBASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 CT030704.2-201ENSMUST00000228887 494 ntBASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Upk3aQ9JKX8 Gm28182-201ENSMUST00000188354 2477 ntBASIC13.62□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms