Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Gm27306-201ENSMUST00000183970 107 ntBASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Gm27680-201ENSMUST00000184192 160 ntBASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Gm27989-201ENSMUST00000184721 107 ntBASIC14.55□□□□□ -0.08
Vps28Q9D1C8 AA619741-201ENSMUST00000195095 646 ntBASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Mir125a-201ENSMUST00000083545 68 ntBASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Vps28Q9D1C8 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Gm46209-201ENSMUST00000217912 553 ntBASIC14.54□□□□□ -0.08
Vps28Q9D1C8 AC155729.1-201ENSMUST00000227758 544 ntBASIC14.54□□□□□ -0.08
Vps28Q9D1C8 AC121598.1-201ENSMUST00000228224 1019 ntBASIC14.54□□□□□ -0.08
Vps28Q9D1C8 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Gm5763-201ENSMUST00000155951 1530 ntBASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Gm44645-201ENSMUST00000205492 1653 ntBASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 AC159649.2-201ENSMUST00000222984 3223 ntBASIC14.54□□□□□ -0.08
Vps28Q9D1C8 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC14.54□□□□□ -0.08
Vps28Q9D1C8 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Gm14451-201ENSMUST00000121581 1542 ntBASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 AC124751.1-201ENSMUST00000222716 1408 ntBASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Gm15653-201ENSMUST00000119247 907 ntBASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Vps28Q9D1C8 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Vps28Q9D1C8 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Vps28Q9D1C8 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Vps28Q9D1C8 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Vps28Q9D1C8 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Vps28Q9D1C8 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Vps28Q9D1C8 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Vps28Q9D1C8 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Vps28Q9D1C8 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Vps28Q9D1C8 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Vps28Q9D1C8 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms